CellexalVR.AnalysisLogic.RScriptRunner Class Reference

This class runs R code from a file using the console or runs a command via an R server session. More...

Static Public Member Functions
static void	SetReferenceManager (ReferenceManager rm)
static string	RunFromCmd (string rCodeFilePath, string args, bool writeOut)
	Runs an R script from a file using Rscript.exe. Example: RScriptRunner.RunFromCmd(curDirectory + "\ImageClustering.r", curDirectory.Replace('\','/')); Getting args passed from C# using R: args = commandArgs(trailingOnly = TRUE) print(args[1]); More...
static void	RunScript (string s)
	Run Rscript on a running r server session instead of starting a new process and loading the object again. Send it to the server by writing the command to run into the "<servername>.input.R". The R backend will read this file once every second and run the commands inside it via "source(input.R)". More...
static string	RunRScript (string path, string args="")
	Runs an R script. More...

Static Public Attributes
static ReferenceManager	referenceManager
static ArrayList	geneResult = new ArrayList()
static bool	serverIdle = true

Detailed Description

This class runs R code from a file using the console or runs a command via an R server session.

Member Function Documentation

RunFromCmd()

static string CellexalVR.AnalysisLogic.RScriptRunner.RunFromCmd ( string  rCodeFilePath, string  args, bool  writeOut  )

static

Runs an R script from a file using Rscript.exe. Example: RScriptRunner.RunFromCmd(curDirectory + "\ImageClustering.r", curDirectory.Replace('\','/')); Getting args passed from C# using R: args = commandArgs(trailingOnly = TRUE) print(args[1]);

Parameters

rCodeFilePath	File where your R code is located.
args	Multiple R args can be seperated by spaces.
writeOut	If the stdout and stderror should be appended to the R log.

Returns

Returns a string with the R responses.

RunRScript()

static string CellexalVR.AnalysisLogic.RScriptRunner.RunRScript ( string  path, string  args = ""  )

static

Runs an R script.

Parameters

path	The path to the R script.
args	The arguments, seperated by spaces.

Returns

The result from the R process.

RunScript()

static void CellexalVR.AnalysisLogic.RScriptRunner.RunScript ( string  s )

static

Run Rscript on a running r server session instead of starting a new process and loading the object again. Send it to the server by writing the command to run into the "<servername>.input.R". The R backend will read this file once every second and run the commands inside it via "source(input.R)".

Parameters

s	s is the full string to be written into the input.R file which the server will then read.
isFile	If the s argument instead is a filePath the function copies that entire file to input.R

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The documentation for this class was generated from the following file:

• Assets/Scripts/AnalysisLogic/RScriptRunner.cs