CellexalVR.AnalysisLogic.NetworkGenerator Class Reference

This class starts the thread that generates the network files and then tells the inputreader to process them. More...

Inheritance diagram for CellexalVR.AnalysisLogic.NetworkGenerator:

Public Member Functions
void	CreateLineMaterials ()
	Creates the materials used when drawing the lines between genes in networks. More...
void	GenerateNetworks ()
void	GenerateNetworks (int layoutSeed)
	Generates networks based on the selectiontoolhandler's last selection. More...
NetworkNode	CreateNetworkNode (string geneName, NetworkCenter center)
	Helper method to create network nodes. More...
NetworkCenter	CreateNetworkCenter (NetworkHandler handler, string name, Vector3 position, int layoutSeed)
	Creates a new network center. More...
NetworkHandler	FindNetworkHandler (string networkName)
	Finds a networkhandler. More...
void	HighLightGene (string geneName)
	Highlights a gene in all networks with a red circle. More...

Public Attributes
ReferenceManager	referenceManager
NetworkCenter	networkCenterPrefab
NetworkNode	networkNodePrefab
Material	networkNodeDefaultMaterial
Material	networkLineDefaultMaterial
List< NetworkHandler >	networkList = new List<NetworkHandler>()
int	selectionNr
string	networkMethod
Material[]	LineMaterials
SelectionManager	selectionManager

Properties
bool	GeneratingNetworks [get]

Detailed Description

This class starts the thread that generates the network files and then tells the inputreader to process them.

Member Function Documentation

CreateLineMaterials()

void CellexalVR.AnalysisLogic.NetworkGenerator.CreateLineMaterials

(

)

Creates the materials used when drawing the lines between genes in networks.

CreateNetworkCenter()

NetworkCenter CellexalVR.AnalysisLogic.NetworkGenerator.CreateNetworkCenter	(	NetworkHandler	handler,
		string	name,
		Vector3	position,
		int	layoutSeed
	)

Creates a new network center.

Parameters

handler	The handler the center should be connected to.
name	The name of the center.
position	The position it should sit at. Should be from Graph.ScaleCoordinates(float, float, float).

Returns

The new network center.

CreateNetworkNode()

NetworkNode CellexalVR.AnalysisLogic.NetworkGenerator.CreateNetworkNode	(	string	geneName,
		NetworkCenter	center
	)

Helper method to create network nodes.

Parameters

geneName

The name of the gene that the network node should represent.

Returns

Returns the newly created NetworkNode.

FindNetworkHandler()

NetworkHandler CellexalVR.AnalysisLogic.NetworkGenerator.FindNetworkHandler

(

string

networkName

)

Finds a networkhandler.

Parameters

networkName

The name of the networkhandler

Returns

A reference to the networkhandler, or null if non was found.

GenerateNetworks()

void CellexalVR.AnalysisLogic.NetworkGenerator.GenerateNetworks

(

int

layoutSeed

)

Generates networks based on the selectiontoolhandler's last selection.

HighLightGene()

void CellexalVR.AnalysisLogic.NetworkGenerator.HighLightGene

(

string

geneName

)

Highlights a gene in all networks with a red circle.

Parameters

geneName

The gene to highlight.

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The documentation for this class was generated from the following file:

• Assets/Scripts/AnalysisLogic/NetworkGenerator.cs